autopkgtest [08:19:19]: git checkout: a93602a Add a debug-fail hook and implement it for autopkgtest-virt-ssh
autopkgtest [08:19:19]: host juju-prod-ues-proposed-migration-machine-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u4qpfp7f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation,src:r-bioc-iranges,src:r-base,src:r-bioc-rsamtools,src:r-bioc-genomicranges,src:r-bioc-s4vectors,src:dbi,src:r-bioc-genomicalignments,src:r-bioc-shortread,src:hmisc,src:kernsmooth,src:lattice,src:rmatrix,src:foreign,src:r-cran-nnet,src:r-cran-ape,src:r-cran-spdep,src:quadprog,src:rcpp,src:r-cran-xml,src:r-cran-mass,src:rgl,src:nlme,src:r-cran-dplyr,src:kernsmooth --apt-upgrade r-bioc-ebseq '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.20.2-1build1 r-bioc-iranges/2.8.1-1build1 r-base/3.4.0-1 r-bioc-rsamtools/1.26.1-2build1 r-bioc-genomicranges/1.26.2-1build1 r-bioc-s4vectors/0.12.1-2build1 dbi/0.6-1-1 r-bioc-genomicalignments/1.10.0-1build1 r-bioc-shortread/1.32.0-1build1 hmisc/4.0-3-1 kernsmooth/2.23-15-3 lattice/0.20-35-1 rmatrix/1.2-10-1 foreign/0.8.68-1 r-cran-nnet/7.3-12-2 r-cran-ape/4.0-1build1 r-cran-spdep/0.6-9-1build1 quadprog/1.5-5-2build1 rcpp/0.12.10-1 r-cran-xml/3.98-1.7-1 r-cran-mass/7.3-47-1 rgl/0.98.1-1 nlme/3.1.131-3 r-cran-dplyr/0.5.0-1build1 kernsmooth/2.23-15-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --name adt-artful-amd64-r-bioc-ebseq-20170509-081919 --image 'ubuntu/ubuntu-artful-.*-amd64-server' --keyname testbed-juju-prod-ues-proposed-migration-machine-3 --net-id=net_ues_proposed_migration -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,novalocal,internal,archive.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,ppa.launchpad.net'"'"'' --mirror=http://ftpmaster.internal/ubuntu
autopkgtest [08:21:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
Get:1 http://ftpmaster.internal/ubuntu artful-proposed InRelease [85.4 kB]
Get:2 http://ftpmaster.internal/ubuntu artful-proposed/multiverse Sources [1,784 B]
Get:3 http://ftpmaster.internal/ubuntu artful-proposed/universe Sources [125 kB]
Get:4 http://ftpmaster.internal/ubuntu artful-proposed/main Sources [33.9 kB]
Get:5 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 Packages [53.7 kB]
Get:6 http://ftpmaster.internal/ubuntu artful-proposed/multiverse amd64 Packages [972 B]
Get:7 http://ftpmaster.internal/ubuntu artful-proposed/universe amd64 Packages [162 kB]
Fetched 463 kB in 0s (1,779 kB/s)
Reading package lists...
Exit request sent.
Creating nova instance adt-artful-amd64-r-bioc-ebseq-20170509-081919 from image ubuntu/ubuntu-artful-adt-amd64-server-20170509.img (UUID 80b31199-39d6-4320-81d6-5e34c12af090)...
autopkgtest [08:21:47]: ERROR: "sh -ec SRCS=$(ls /etc/apt/sources.list /etc/apt/sources.list.d/*.list 2>/dev/null|| true); REL=$(sed -rn '/^(deb|deb-src) .*(ubuntu.com|debian.org|ftpmaster|file:\/\/\/tmp\/testarchive)/ { s/^[^ ]+ +(\[.*\] *)?[^ ]* +([^ -]+) +.*$/\2/p}' $SRCS | head -n1); mkdir -p /etc/apt/preferences.d; PKGS=""; PKGS="$PKGS $(apt-cache showsrc r-bioc-variantannotation r-bioc-iranges r-base r-bioc-rsamtools r-bioc-genomicranges r-bioc-s4vectors dbi r-bioc-genomicalignments r-bioc-shortread hmisc kernsmooth lattice rmatrix foreign r-cran-nnet r-cran-ape r-cran-spdep quadprog rcpp r-cran-xml r-cran-mass rgl nlme r-cran-dplyr kernsmooth | awk '/^Package-List:/ { show=1; next } (/^ / && show==1) { print $1; next } { show=0 }' |sort -u | tr '\n' ' ')"; printf "Package: $PKGS\nPin: release a=${REL}-proposed\nPin-Priority: 990\n\nPackage: *\nPin: release a=$REL\nPin-Priority: 900\n\nPackage: *\nPin: release a=${REL}-updates\nPin-Priority: 900\n\nPackage: *\nPin: release a=${REL}-proposed\nPin-Priority: 800\n" > /etc/apt/preferences.d/autopkgtest-${REL}-proposed; " failed with stderr "W: Unable to locate package kernsmooth
"